Published papers
Yamamoto, Eiji
41-60 items (total 75)
Detection of transition times from single-particle-tracking trajectories
- Author
- T Akimoto, E Yamamoto
- Publication Title
- Magazine name Physical Review E 96 (5), 052138 Volume 96(Issue 5) (Publication Date）2017）
- ISSN
- 2470-0045
Separation of water-ethanol solutions with carbon nanotubes and electric fields
- Author
- Winarto, Takaiwa Daisuke, Yamamoto Eiji, Yasuoka Kenji
- Publication Title
- Volume 18(Issue 48) Start Page 33310 - End Page 33319 (Publication Date）2016）
- ISSN
- 1463-9076
Effects of temperature, concentration, and isomer on the hydration structure in monosaccharide solutions
- Author
- K Tomobe, E Yamamoto, M Yasui, K Yasuoka
- Publication Title
- Magazine name Physical Chemistry Chemical Physics 19 (23), 15239-15246 Volume 19(Issue 23) Start Page 15239 - End Page 15246 (Publication Date）2017）
- ISSN
- 1463-9076
The Acidic Tail of HMGB1 Regulates its Secondary Structure and Conformational Flexibility: A Circular Dichroism and Molecular Dynamics Simulation Study
- Author
- WL Anggayasti, K Ogino, E Yamamoto, E Helmerhorst, K Yasuoka, ...
- Publication Title
- Magazine name Computational and Structural Biotechnology Journal Start Page 1160 - End Page 1172 (Publication Date）2020）
- ISSN
- 2001-0370
Universal relation between instantaneous diffusivity and radius of gyration of proteins in aqueous solution
- Author
- E Yamamoto, T Akimoto, A Mitsutake, R Metzler
- Publication Title
- Magazine name arXiv preprint arXiv:2009.06829 Volume 126(Issue 12) (Publication Date）2020）
- ISSN
- 0031-9007
Molecular Dynamic Simulations to Probe Water Permeation Pathways of GPCRs
- Author
- K Tomobe, E Yamamoto, K Yasuoka
- Publication Title
- Magazine name G Protein-Coupled Receptor Signaling, 21-30 Start Page 21 - End Page 30 (Publication Date）2019）
- ISSN
- 1064-3745
Separation of water-alcohol mixtures using carbon nanotubes under an electric field
- Author
- Winarto, Yamamoto Eiji, Yasuoka Kenji
- Publication Title
- Volume 21(Issue 28) Start Page 15431 - End Page 15438 (Publication Date）2019/07）
- ISSN
- 1463-9076
Differences in ligand-induced protein dynamics extracted from an unsupervised deep learning approach correlate with protein–ligand binding affinities
- Author
- I Yasuda, K Endo, E Yamamoto, Y Hirano, K Yasuoka
- Publication Title
- Magazine name Communications Biology 5 (1), 1-9 (Publication Date）2022）
Theoretical Design of a Janus-Nanoparticle-Based Sandwich Assay for Nucleic Acids
- Author
- T Sato, K Esashika, E Yamamoto, T Saiki, N Arai
- Publication Title
- Magazine name International Journal of Molecular Sciences 23 (15), 8807 Volume 23(Issue 15) (Publication Date）2022）
- ISSN
- 1661-6596
Water structures in tip-charged carbon nanotubes
- Author
- Y Ono, E Yamamoto, K Yasuoka
- Publication Title
- Magazine name The Journal of Chemical Physics 161 (5) Volume 161(Issue 5) (Publication Date）2024）
- ISSN
- 0021-9606
Molecular dynamics study on the permeation directionality of water molecules through AQP4
- Author
- N Kuribayashi, E Yamamoto, Y Hirano, K Yasuoka
- Publication Title
- Magazine name Biophysical Journal 123 (3), 66a-67a Volume 123(Issue 3) Start Page 66A - End Page 67A (Publication Date）2024）
- ISSN
- 0006-3495
Large‐Scale FMO‐MP2 Calculations of the Spike Protein Droplet Model
- Author
- H Doi, T Nakano, K Sakakura, K Akisawa, K Okuwaki, Y Hirano, ...
- Publication Title
- Magazine name Journal of Computational Chemistry 46 (4), e70052 (Publication Date）2025）
Highly bright and stable NIR-BRET with blue-shifted coelenterazine derivatives for deep-tissue imaging of molecular events in vivo
- Author
- R Nishihara, R Paulmurugan, T Nakajima, E Yamamoto, A Natarajan, ...
- Publication Title
- Magazine name Theranostics 9 (9), 2646 Volume 9(Issue 9) Start Page 2646 - End Page 2661 (Publication Date）2019）
- ISSN
- 1838-7640
FMO-based interaction analysis on DEET/icaridin—AgamOBP1 complex
- Author
- K Akisawa, Y Sakuma, A Tsukamoto, H Doi, K Okuwaki, Y Hirano, ...
- Publication Title
- Magazine name Chemistry Letters 54 (2), upaf030 (Publication Date）2025）
Coarse-grained model of disordered RNA for simulations of biomolecular condensates
- Author
- I Yasuda, S von Bülow, G Tesei, E Yamamoto, K Yasuoka, ...
- Publication Title
- Magazine name Journal of chemical theory and computation 21 (5), 2766-2779 Volume 21(Issue 5) Start Page 2766 - End Page 2779 (Publication Date）2025）
- ISSN
- 1549-9618
Estimating relaxation times from a single trajectory
- Author
- T Akimoto, E Yamamoto, T Uneyama
- Publication Title
- Magazine name Journal of the Physical Society of Japan 92 (7), 074005 Volume 92(Issue 7) (Publication Date）2023）
- ISSN
- 0031-9015
Tunable pheromone interactions among microswimmers
- Author
- B Nakayama, H Nagase, H Takahashi, Y Saito, S Hatayama, K Makino, ...
- Publication Title
- Magazine name Proceedings of the National Academy of Sciences 120 (9), e2213713120 Volume 120(Issue 9) (Publication Date）2023）
- ISSN
- 0027-8424
Heterogeneous biological membranes regulate protein partitioning via fluctuating diffusivity
- Author
- K Sakamoto, T Akimoto, M Muramatsu, MSP Sansom, R Metzler, ...
- Publication Title
- Magazine name PNAS nexus 2 (8), pgad258 Volume 2(Issue 8) (Publication Date）2023）
Ligand-induced protein dynamics differences correlate with protein-ligand binding affinities: An unsupervised deep learning approach
- Author
- I Yasuda, K Endo, E Yamamoto, Y Hirano, K Yasuoka
- Publication Title
- Magazine name arXiv preprint arXiv:2109.01339 (Publication Date）2021）
Structures of water molecules in carbon nanotubes induced with electric fields and its application for water-methanol separation
- Author
- W Winarto, D Takaiwa, E Yamamoto, K Yasuoka
- Publication Title
- Magazine name Applied Mechanics and Materials 842, 453-456 (Publication Date）2016）