Keio University

Published papers

Yasuoka, Kenji

101-120 items (total 209)

Hydrogen-bonded clusters on the vapor/ethanol-aqueous-solution interface

Author
Andoh Y, Yasuoka K
Publication Title
Magazine name Journal of Physical Chemistry B Start Page 23264-23273 (Publication Date)2006)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Free-energy calculation of structure-H hydrates

Author
Okano Y, Yasuoka K
Publication Title
Magazine name Journal of Chemical Physics Start Page 024510 (Publication Date)2006)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Molecular dynamics simulation of quasi-two-dimensional water cluster on ice nucleation protein

Author
Murakami, D. and Yasuoka, K.
Publication Title
Magazine name J. Chem. Phys. Start Page 054303 (Publication Date)2012)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Diffusive Nature of Xenon Anesthetic Changes Properties of a Lipid Bilayer: Molecular Dynamics Simulations

Author
Yamamoto, E., Akimoto, T., Shimizu, H., Hirano, Y., Yasui, M. and Yasuoka, K.
Publication Title
Magazine name J. Phys. Chem. B Start Page 8989 (Publication Date)2012)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Molecular dynamics study of ethanol solvated by water on the Pt (1 1 1) surface

Author
Kholmurodov, K., Dushanov, E., Yasuoka, K., Khalil, H., Galal, A., Ahmed, S., Sweilam, N., and Moharram, H.
Publication Title
Magazine name Chemical Physics Start Page 41 (Publication Date)2012)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Structural features of aquaporin 4 supporting the formation of arrays and junctions in biomembranes

Author
Höfinger, S., Yamamoto, E., Hirano, Y., Zerbettoa, F., Narumi, T., Yasuoka, K., and Yasuii, M.
Publication Title
Magazine name Biochimica et Biophysica Acta Start Page 2234 (Publication Date)2012)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Molecular Dynamics Simulations of a DNA Photolyase Protein : High-Mobility and Conformational Changes of the FAD Molecule at Low Temperatures

Author
Kholmurodov, K., Dushanov, E., and Yasuoka, K.
Publication Title
Magazine name Advances in Bioscience and Biotechnology Start Page 169 (Publication Date)2012)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Molecular Dynamics Simulations on trans- and cis-Decalins:The Effect of Partial Atomic Charges and Adjustment of "Real Densities"

Author
Eremin, R., Kholmurodov, K., Avdeev, M., Petrenko, V. and Yasuoka, K.
Publication Title
Magazine name Int. J. Chem. Start Page 14 (Publication Date)2012)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Multibaric-Multithermal Ensemble Study of Liquid-Solid Phase Transition in Lennard-Jones Particles

Author
Kaneko, T., Mitsutake, A., and Yasuoka, K.
Publication Title
Magazine name J. Phys. Soc. Jpn. Start Page SA014 (Publication Date)2012)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

The diffusion and concentration effects of formamide on a TiO2 surface in the presence of a water solvent

Author
Dushanov, E., Kholmurodov, Kh., and Yasuoka, K.
Publication Title
Magazine name Natural Science Start Page 313 (Publication Date)2012)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Estimation of breakdown electric-field strength while reflecting local structures of SiO2 using first-principles molecular orbital calculation technique

Author
Seki, H., Shibuya, Y., Kobayashi, D., Nohira, H., Yasuoka, K., and Hirose, K.
Publication Title
Magazine name Jpn. J. Appl. Phys. Start Page 04DA07 (Publication Date)2012)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Cutoff radius effect of the isotropic periodic sum method for polar molecules in a bulk water system

Author
Takahashi, K., Narumi, T., and Yasuoka, K.
Publication Title
Magazine name Molec. Simul. Start Page 397 (Publication Date)2012)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Liquid-solid phase transitions of Lennard-Jones particles confined to slit pores: Towards the construction of temperature-pressure-slit width phase diagram

Author
Kaneko, T., Yasuoka, K., and Zeng, X. C.
Publication Title
Magazine name Molec. Simul. Start Page 373 (Publication Date)2012)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Nanochannel with Uniform and Janus Surfaces: Shear Thinning and Thickening in Surfactant Solution

Author
Arai, N., Yasuoka, K., and Zeng, X. C.
Publication Title
Magazine name Langmuir Start Page 2866 (Publication Date)2012)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Molecular Vibrations of Methane Molecules in the Structure I Clathrate Hydrate from Ab Initio Molecular Dynamics Simulation

Author
Hiratsuka, M., Ohmura, R., Sum, A. K., and Yasuoka, K.
Publication Title
Magazine name J. Chem. Phys. Start Page 044508 (Publication Date)2012)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Molecular Dynamics Simulation of the Interaction of Ethanol - Water Mixture with a Pt Surface

Author
Kholmurodov, K., Dushanov, E., Yasuoka, K., Khalil, H., Galal, A., Ahmed, A., Sweilam, N. and Moharram, H.
Publication Title
Magazine name Natural Science Start Page 1011 (Publication Date)2011)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

A combination of the tree-code and IPS method to simulate large scale systems by molecular dynamics

Author
Takahashi, K. Z., Narumi, T., and Yasuoka, K.
Publication Title
Magazine name J. Chem. Phys. Start Page 174108 (Publication Date)2011)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Size Dependent Phase Changes in Water Clusters

Author
Kaneko, T., Akimoto, T., Yasuoka, K., Mitsutake, A., and Zeng, X. C.
Publication Title
Magazine name J. Chem. Theory Comput. Start Page 3083 (Publication Date)2011)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Non-Gaussian Fluctuations Resulting from Power-Law Trapping in a Lipid Bilayer

Author
Akimoto, T., Yamamoto, E., Yasuoka, K., Hirano, Y., and Yasui, M.
Publication Title
Magazine name Phys. Rev. Lett. Start Page 178103 (Publication Date)2011)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

MD Simulations of the P53 Oncoprotein Structure: the Effect of the Arg273-->His Mutation on the DNA Binding Domain

Author
Kholmurodov, K., Dushanov, E., and Yasuoka, K.
Publication Title
Magazine name Advances in Bioscience and Biotechnology Start Page 330 (Publication Date)2011)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With