Published papers
Yasuoka, Kenji
181-200 items (total 209)
Tyr-317 phosphorylation increases shc structural rigidity and reduces coupling of domain motions remote from the phosphorylation site as revealed by molecular dynamics simulations
- Author
- Suenaga A, Kiyatkin AB, Hatakeyama M, Futatsugi N, Okimoto N, Hirano Y, Narumi T, Kawai A, Susukita R, Koishi T, Furusawa H, Yasuoka K, Takada N, Ohno Y, Taiji M, Ebisuzaki T, Hoek JB, Konagaya A, Kholodenko BN
- Publication Title
- Magazine name Journal of Biological Chemistry Start Page 4657-4662 (Publication Date）2004）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
Molecular Dynamics Simulations of Prion Proteins - Effect of Ala117->Val mutation -
- Author
- Okimoto N, Yamanaka K, Suenaga A, Hirano Y, Futatsugi N, Narumi T, Yasuoka K, Susukita R, Koishi T, Furusawa H, Kawai A, Hata M, Hoshino T, Ebisuzaki T
- Publication Title
- Magazine name Chem-Bio Informatics Journal Volume 3(Issue 1) Start Page 1-11 (Publication Date）2003）
- Authorship Category
- Joint Work
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- Research paper (scientific journal)
- Peer-review Status
- With
Structure of cold nuclear matter at subnuclear densities by quantum molecular dyna
- Author
- Watanabe G, Sato K, Yasuoka K, Ebisuzaki T
- Publication Title
- Magazine name Physical Review C Start Page 035806 (Publication Date）2003）
- Authorship Category
- Joint Work
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- Research paper (scientific journal)
- Peer-review Status
- With
Large scale molecular dynamics simulation of nucleation in supercooled NaCl
- Author
- Koishi T, Yasuoka K, Ebisuzaki T
- Publication Title
- Magazine name Journal of Chemical Physics Start Page 11298-11305 (Publication Date）2003）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
Hardware accelerator for molecular dynamics: MDGRAPE-2
- Author
- Susukita R, Ebisuzaki T, Elmegreen BG, Furusawa H, Kato K, Kawai A, Kobayashi Y, Koishi T, McNiven GD, Narumi T, Yasuoka K
- Publication Title
- Magazine name Computer Physics Communications Start Page 115-131 (Publication Date）2003）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
Molecular dynamics study on class A beta-lactamase: Hydrogen bond network among the functional groups of penicillin G and side chains of the conserved residues in the active site
- Author
- Fujii Y, Okimoto N, Hata M, Narumi T, Yasuoka K, Susukita R, Suenaga A, Futatsugi N, Koishi T, Furusawa H, Kawai A, Ebisuzaki T, Neya S, Hoshino T
- Publication Title
- Magazine name Journal of Physical Chemistry B Start Page 10274-10283 (Publication Date）2003）
- Authorship Category
- Joint Work
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- Research paper (scientific journal)
- Peer-review Status
- With
Statistical study of clathrate-hydrate nucleation in a water/hydrochlorofluorocarbon system: Search for the nature of the "memory effect"
- Author
- Ohmura R, Ogawa M, Yasuoka K, Mori YH
- Publication Title
- Magazine name Journal of Physical Chemistry B Start Page 5289-5293 (Publication Date）2003）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
Microscopic study of nuclear "pasta": Quantum molecular dynamics approach
- Author
- Watanabe G, Sato K, Yasuoka K, Ebisuzaki T
- Publication Title
- Magazine name Nuclear Physics A Start Page 700C-702C (Publication Date）2003）
- Authorship Category
- Joint Work
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- Research paper (scientific journal)
- Peer-review Status
- With
Microscopic study of nuclear "pasta" by quantum molecular dynamics
- Author
- Watanabe G, Sato K, Yasuoka K, Ebisuzaki T
- Publication Title
- Magazine name Progress of Theoretical Physics Supplement Start Page 638-639 (Publication Date）2002）
- Authorship Category
- Joint Work
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- Research paper (scientific journal)
- Peer-review Status
- With
Molecular dynamics study of the solidification process in alkali halide cluster
- Author
- Koishi T, Yasuoka K, Narumi T, Susukita R, Furusawa H, Ebisuzaki T
- Publication Title
- Magazine name Journal of Non-Crystalline Solids Start Page 332-336 (Publication Date）2002）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
Numerical simulations of magnetic materials with MD-GRAPE: curvature induced anisotropy
- Author
- Elmegreen BG, Koch R, Yasuoka K, Furusawa H, Narumi T, Susukita R, Ebisuzaki T
- Publication Title
- Magazine name Journal of Magnetism and Magnetic Materials Start Page 39-48 (Publication Date）2002）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
Microscopic study of slablike and rodlike nuclei: Quantum molecular dynamics approach
- Author
- Watanabe G, Sato K, Yasuoka K, Ebisuzaki T
- Publication Title
- Magazine name Physical Review C Start Page 012801 (Publication Date）2002）
- Authorship Category
- Joint Work
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- Research paper (scientific journal)
- Peer-review Status
- With
MD simulation of cluster-surface impacts for metallic phases: soft landing, droplet spreading and implantation
- Author
- Kholmurodov K, Puzynin I, Smith W, Yasuoka K, Ebisuzaki T
- Publication Title
- Magazine name Computer Physics Communications Start Page 1-16 (Publication Date）2001）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
Molecular dynamics simulation of supersaturated vapor nucleation in slit pore. II. Thermostatted atomic-wall model
- Author
- Kholmurodov KT, Yasuoka K, Zeng XC
- Publication Title
- Magazine name Journal of Chemical Physics Start Page 9578-9584 (Publication Date）2001）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
Molecular dynamics simulation of dissociation process for methane hydrate
- Author
- K. Yasuoka and S. Murakoshi
- Publication Title
- Magazine name Annals of the New York Academy of Sciences Start Page 678-684 (Publication Date）2000）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- Without
Molecular Processes of Cluster Formation in Supersaturated Vapor
- Author
- M. Matsumoto, K. Yasuoka, and K. Ohguchi
- Publication Title
- Magazine name Thermal Science & Engineering Start Page 75-80 (Publication Date）1999/11）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
Computer Simulation of Fluid Phase Change: Vapor Nucleation and Bubble Formation Dynamics,
- Author
- Kinjo T, Ohguchi K, Yasuoka K, Matsumoto M
- Publication Title
- Magazine name Computational Materials Science Start Page 138-141 (Publication Date）1999/02）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
Molecular Dynamics of Homogeneous Nucleation in the Vapor Phase II. Water
- Author
- Yasuoka K, Matsumoto M
- Publication Title
- Magazine name Journal of Chemical Physics Start Page 8463-8470 (Publication Date）1998/11）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
Molecular Dynamics of Homogeneous Nucleation in the Vapor Phase I. Lennard-Jones Fluid
- Author
- Yasuoka K, Matsumoto M
- Publication Title
- Magazine name Journal of Chemical Physics Start Page 8451-8462 (Publication Date）1998/11）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
Molecular Dynamics Simulations of the Homogeneous Nucleation of UF6 and SF6 Molecules: Effects of the Intramolecular Vibrational Relaxations on the Nucleation Rates
- Author
- Tanimura S, Yasuoka K, Ebisuzaki T
- Publication Title
- Magazine name Journal of Chemical Physics Start Page 4492-4497 (Publication Date）1998/09）
- Authorship Category
- Joint Work
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- Research paper (scientific journal)
- Peer-review Status
- With