Keio University

Published papers

Kanai, Akio

61-80 items (total 83)

tRNADB-CE 2011: tRNA gene database curated manually by experts.

Author
Abe, T., Ikemura, T., Sugahara, J., Kanai, A., Ohara, Y., Uehara, H., Kinouchi, M., Kanaya, S., Yamada, Y., Muto, A. and Inokuchi, H.
Publication Title
Magazine name Nucleic Acids Research Start Page D210-D213 (Publication Date)2011)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

GTP-dependent RNA 3'-terminal phosphate cyclase from the hyperthermophilic archaeon Pyrococcus furiosus

Author
Sato, A., Soga, T., Igarashi, K., Takesue, K., Tomita, M. and Kanai, A.
Publication Title
Magazine name Genes to Cells Start Page 1190-1199 (Publication Date)2011/12)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Vertebrate-virus-encoded microRNAs and their sequence conservation

Author
Takane, K. and Kanai, A.
Publication Title
Magazine name Japanese Journal of Infectious Diseases Volume 64(Issue 5) Start Page 357-366 (Publication Date)2011/09)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

A screening system for artificial small RNAs that inhibit the growth of Escherichia coli

Author
Mizuki Komasa, Kosuke Fujishima, Kiriko Hiraoka, Atsuko Shinhara, Baek-Seok Lee, Masaru Tomita and Akio Kanai
Publication Title
Magazine name The Journal of Biochemistry Volume 150(Issue 3) Start Page 289-294 (Publication Date)2011/09)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Systems biology reveals microRNA-mediated gene regulation

Author
Watanabe, Y. and Kanai, A.
Publication Title
Magazine name Frontiers in Genetics Start Page 29 (Publication Date)2011/06)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Permuted tRNA genes in the nuclear and nucleomorph genomes of photosynthetic eukaryotes.

Author
Maruyama, S., Sugahara, J., Kanai, A. and Nozaki, H.
Publication Title
Magazine name Molecular Biology and Evolution Volume 27(Issue 5) Start Page 1070-1076 (Publication Date)2010/05)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Transcription-associated mutagenesis increase protein sequence diversity more effectively than does random mutagenesis in Escherichia coli

Author
Kim, H., Lee, B.-S., Tomita, M. and Kanai, A.
Publication Title
Magazine name PLoS ONE Volume 5(Issue 5) Start Page e10567 (Publication Date)2010/05)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Computational prediction and experimental validation of evolutionarily conserved microRNA target genes in bilaterian animals

Author
Takane, K., Fujishima, K., Watanabe, Y., Sato, A., Saito, N., Tomita, M. and Kanai, A.
Publication Title
Magazine name BMC Genomics Volume 11(Issue 101) (Publication Date)2010/02)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Characterization of RNase HII substrate recognition using RNase HII-Argonaute chimeric enzymes from Pyrococcus furiosus

Author
Sayaka Kitamura, Kosuke Fujishima, Asako Sato, Daisuke Tsuchiya, Masaru Tomita and Akio Kanai
Publication Title
Magazine name Biochemical Journal Volume 426(Issue 3) Start Page 337-344 (Publication Date)2010/01)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Disrupted tRNA gene diversity and possible evolutionary scenarios

Author
Sugahara, J., Fujishima, K., Morita, K., Tomita, M. and Kanai, A.
Publication Title
Magazine name Journal of Molecular Evolution Volume 69(Issue 5) Start Page 497-504 (Publication Date)2009/10)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Identification of novel endogenous antisense transcripts by DNA microarray analysis targeting complementary strand of annotated genes

Author
Numata, K., Osada, Y., Okada, Y., Saito, R., Hiraiwa, N., Nakaoka, H., Yamamoto, N., Watanabe, K., Okubo, K., Kohama, C., Kanai, A., Abe, K. and Kiyosawa, H.
Publication Title
Magazine name BMC Genomics Start Page 392 (Publication Date)2009/08)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Effect of codon adaptation on codon-level and gene-level translation efficiency in vivo.

Author
Nakahigashi, K., Takai, Y., Shiwa, Y., Wada, M., Honma, M., Yoshikawa, H., Tomita, M., Kanai, A. and Mori. H.
Publication Title
Magazine name BMC Genomics Volume 15(Issue 1) Start Page 1115 (Publication Date)2014/12)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Welcome to the new tRNA world!

Author
Akio Kanai
Publication Title
Magazine name Frontiers in Genetics Start Page 336 (Publication Date)2014/09)
Authorship Category
Single Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

tRNA gene diversity in the three domains of life

Author
Fujishima, K. and Kanai, A.
Publication Title
Magazine name Frontiers in Genetics Start Page 142 (Publication Date)2014/04)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Alternative genetic code for amino acids and transfer RNA revisited

Author
Hamashima, K. and Kanai, A.
Publication Title
Magazine name Biomolecular Concepts Volume 4(Issue 3) Start Page 309-318 (Publication Date)2013)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Identification of highly-disrupted tRNA genes in nuclear genome of the red alga, Cyanidioschyzon merolae 10D

Author
Soma, A., Sugahara, J., Onodera, A., Yachie, N., Kanai, A., Watanabe, S., Yoshikawa, H., Ohnuma, M., Kuroiwa, H., Kuroiwa, T. and Sekine, Y.
Publication Title
Magazine name Scientific Reports Start Page 2321 (Publication Date)2013/07)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: Insights into the evolution of a novel three-unit composition and a unique loop involved in broad substrate specificity.

Author
Hirata, A., Fujishima, K., Yamagami, R., Kawamura, T., Banfield, JF., Kanai, A. and Hori, H.
Publication Title
Magazine name Nucleic Acids Research Volume 40(Issue 20) Start Page 10554-10566 (Publication Date)2012)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Identification and expression analysis of mRNA-like non-coding RNAs in Drosophila.

Author
Inagaki, S., Numata, K., Kondo, T., Tomita, M., Yasuda, K., Kanai, A. and Kageyama, Y.
Publication Title
Magazine name Genes to Cells Start Page 1163-1173 (Publication Date)2005/12)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
With

Toward large-scale modeling of the microbial cell for computer simulation

Author
ISHII N, ROBERT M, NAKAYAMA Y, KANAI A, TOMITA M
Publication Title
Magazine name Journal of Biotechnology Volume 113(Issue 1/3) Start Page 281-294 (Publication Date)2004/09)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
Without
ISSN
01681656

Cooperative regulation for Okazaki fragment processing by RNase HII and FEN-1 purified from a hyperthermophilic archaeon, Pyrococcus furiosus

Author
Sato A, Kanai A, Itaya M, Tomita M
Publication Title
Magazine name BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS Volume 309(Issue 1) Start Page 247-252 (Publication Date)2003/09)
Authorship Category
Joint Work
Publication Category
Research paper (scientific journal)
Peer-review Status
Without
ISSN
0006-291X