Published papers
Arakawa, Kazuharu
101-120 items (total 124)
Multiple High-Throughput Analyses Monitor the Response of E. coli to Perturbations
- Author
- ARAKAWA Kazuharu
- Publication Title
- Magazine name Science Volume 316(Issue 5824) Start Page 593-597 (Publication Date）2007）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
Restauro-G: A Rapid Genome Re-Annotation System for Comparative Genomics
- Author
- ARAKAWA Kazuharu
- Publication Title
- Magazine name Genomics Proteomics Bioinformatics Volume 5(Issue 1) Start Page 53-58 (Publication Date）2007）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
The GC skew index: a measure of genomic compositional asymmetry and the degree of replicational selection
- Author
- ARAKAWA Kazuharu
- Publication Title
- Magazine name Evolutionary Bioinformatics Start Page 145-154 (Publication Date）2007）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
Selection effects on the positioning of genes and gene structures from the interplay of replication and transcription in bacterial genomes
- Author
- ARAKAWA Kazuharu
- Publication Title
- Magazine name Evolutionary Bioinformatics Start Page 279-286 (Publication Date）2007）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
Large-scale Modeling for Systems Biology
- Author
- ARAKAWA Kazuharu
- Publication Title
- Magazine name BIOforum Europe Start Page 54-55 (Publication Date）2006）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- Without
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications
- Author
- Katayama T, Wilkinson MD, Vos R, Kawashima T, Kawashima S, Nakao M, Yamamoto Y, Chun HW, Yamaguchi A, Kawano S, Aerts J, Aoki-Kinoshita KF, Arakawa K, Aranda B, Bonnal RJ, Fernandez JM, Fujisawa T, Gordon PM, Goto N, Haider S, Harris T, Hatakeyama T, Ho I, Itoh M, Kasprzyk A, Kido N, Kim YJ, Kinjo AR, Konishi F, Kovarskaya Y, von Kuster G, Labarga A, Limviphuvadh V, McCarthy L, Nakamura Y, Nam Y, Nishida K, Nishimura K, Nishizawa T, Ogishima S, Oinn T, Okamoto S, Okuda S, Ono K, Oshita K, Park KJ, Putnam N, Senger M, Severin J, Shigemoto Y, Sugawara H, Taylor J, Trelles O, Yamasaki C, Yamashita R, Satoh N, Takagi T.
- Publication Title
- Magazine name Journal of Biomedical Semantics Volume 2(Issue 1) Start Page 4 (Publication Date）2011/08）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- Without
Metabolic flux analysis and visualization
- Author
- TOYA Yoshihiro, KONO Nobuaki, ARAKAWA Kazuharu, TOMITA Masaru
- Publication Title
- Magazine name Journal of Proteome Research Volume 10(Issue 8) Start Page 3313-3323 (Publication Date）2011/08）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
Quantitative analysis of replication-related mutation and selection pressures in bacterial chromosomes and plasmids using generalised GC skew index
- Author
- ARAKAWA Kazuharu, Suzuki H, Tomita M
- Publication Title
- Magazine name BMC Genomics Start Page 640 (Publication Date）2009/12）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
Pathway Projector: Web-based Zoomable Pathway Browser using KEGG Atlas and Google Maps API
- Author
- Kono N, ARAKAWA Kazuharu, Ogawa R, Kido N, Oshita K, Ikegami K, Tamaki S, Tomita M
- Publication Title
- Magazine name PLoS One Volume 4(Issue 11) Start Page e7710 (Publication Date）2009/11）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
A web server for interactive and zoomable Chaos Game Representation images
- Author
- ARAKAWA Kazuharu,Oshita K, Tomita M
- Publication Title
- Start Page 6 (Publication Date）2009/09）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
Genome Projector: zoomable genome map with multiple views
- Author
- ARAKAWA Kazuharu, TAMAKI, Satoshi, KONO, Nobuaki, KIDO, Nobuhiro, IKEGAMI Keita, OGAWA Ryu, TOMITA Masaru
- Publication Title
- Magazine name BMC Bioinformatics Start Page 31 (Publication Date）2009/01）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- Without
Visualizing Complex Omics Information - Scientific Visualization for Genomics and Systems Biology
- Author
- ARAKAWA Kazuharu
- Publication Title
- Start Page 27-29 (Publication Date）2008）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- Without
Computational Genome Analysis Using The G-language System
- Author
- ARAKAWA Kazuharu
- Publication Title
- Magazine name Genes, Genomes and Genomics Volume 2(Issue 1) Start Page 1-13 (Publication Date）2008）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- Without
Comparative study of circadian oscillatory network models of Drosophila
- Author
- ARAKAWA Kazuharu
- Publication Title
- Magazine name Artificial Life Volume 14(Issue 1) Start Page 29-48 (Publication Date）2008）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
Noise-reduction filtering for accurate detection of replication termini in bacterial genomes
- Author
- ARAKAWA Kazuharu
- Publication Title
- Magazine name Febs Letters Volume 581(Issue 2) Start Page 253-258 (Publication Date）2007）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
Significance of the genomic properties of Chi sites validated from the distribution of all octamers in Escherichia coli
- Author
- ARAKAWA Kazuharu
- Publication Title
- Magazine name Gene Volume 392(Issue 1-2) Start Page 239-246 (Publication Date）2007）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies
- Author
- Toshiaki Katayama*, Mark D Wilkinson, Gos Micklem, Shuichi Kawashima, Atsuko Yamaguchi, Mitsuteru Nakao, Yasunori Yamamoto, Shinobu Okamoto, Kenta Oouchida, Hong-Woo Chun, Jan Aerts, Hammad Afzal, Erick Antezana, Kazuharu Arakawa, Bruno Aranda, Francois Belleau, Jerven Bolleman, Raoul JP Bonnal, Brad Chapman, Peter JA Cock, Tore Eriksson, Paul MK Gordon, Naohisa Goto, Kazuhiro Hayashi, Heiko Horn, Ryosuke Ishiwata, Eli Kaminuma, Arek Kasprzyk, Hideya Kawaji, Nobuhiro Kido, Young Joo Kim, Akira R Kinjo, Fumikazu Konishi, Kyung-Hoon Kwon, Alberto Labarga, Anna-Lena Lamprecht, Yu Lin, Pierre Lindenbaum, Luke McCarthy, Hideyuki Morita, Katsuhiko Murakami, Koji Nagao, Kozo Nishida, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Keiichiro Ono, Kazuki Oshita, Keun-Joon Park, Pjotr Prins, Taro L Saito, Matthias Samwald, Venkata P Satagopam, Yasumasa Shigemoto, Richard Smith, Andrea Splendiani, Hideaki Sugawara, James Taylor, Rutger A Vos, David Withers, Chisato Yamasaki, Christ
- Publication Title
- Magazine name Journal of Biomedical Semantics Start Page 6 (Publication Date）2013）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
Merging Multiple Omics Datasets In Silico: Statistical Analyses and Data Interpretation
- Author
- ARAKAWA Kazuharu, Tomita M
- Publication Title
- Magazine name Methods Mil. Biol. Start Page 459-470 (Publication Date）2013）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- Without
Two families of novel abundant heat-soluble proteins in an anhydrobiotic tardigrade
- Author
- Yamaguchi A, Tanaka S, Yamaguchi S, Kuwahara H, Takamura C, Ohmi S, Horikawa DD, Toyoda A, Katayama T, Arakawa K, Fujiyama A, Kubo T, Kunieda T
- Publication Title
- Magazine name PLoS One Volume 7(Issue 8) Start Page e44209 (Publication Date）2012）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With
Validation of bacterial replication termination models using simulation of genomic mutations
- Author
- KONO Nobuaki, ARAKAWA Kazuharu, TOMITA Masaru
- Publication Title
- Magazine name PLoS One Volume 7(Issue 4) Start Page e34526 (Publication Date）2012）
- Authorship Category
- Joint Work
- Publication Category
- Research paper (scientific journal)
- Peer-review Status
- With